Frederick (Erick) Matsen's Group at the FHCRC

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Group news (RSS)

• 27 Mar 2013 » Welcome Brian Claywell!
• 11 Dec 2012 » nestly paper published
• 03 Sep 2012 » The mean and variance of phylogenetic diversity under rarefaction
• 31 Aug 2012 » You can feel safe from bioterrorism now
• 30 Aug 2012 » Lucie Etienne joins!
• 30 Jun 2012 » New paper on 16s survey of bacterial vaginosis
• 22 Jun 2012 » New paper on phylogenomics of Heterochromatin Protein 1
• 31 May 2012 » How to choose database sequences for comparative analysis?
• 21 May 2012 » Paper out on algebraic approach to tree shape
• 22 Feb 2012 » New paper on phylogenetic placement file format
• 28 Jan 2012 » New paper on primate vs. lentivirus arms race
• 11 Jan 2012 » Chris Small joins the team
• 27 Sep 2011 » New paper on reconciling taxonomy and phylogeny
• 27 Jul 2011 » Edge principal components / squash clustering paper up on arXiv
• 04 May 2011 » (Hopefully) final version of Kantorovich-Rubinstein paper on arXiv
• 24 Apr 2011 » fhcrc/ampliconnoise: our frontend for Chris Quince' denoising code
• 16 Mar 2011 » nestly: software for combinatorial parameter choices
• 14 Mar 2011 » Connor McCoy joins the team
• 18 Jan 2011 » Aaron Gallagher joins the team

pplacer news (RSS)

• 21 May 2012 » v1.1.alpha13: New guppy commands and fixes
• 14 Mar 2012 » v1.1.alpha12: new code and general improvements
• 18 Dec 2011 » v1.1.alpha11: Bugfix and minor improvements
• 28 Oct 2011 » v1.1.alpha10: FastTree CAT model support and big-tree heuristics
• 18 Oct 2011 » v1.1.alpha09: many new features and fixes
• 18 Jun 2011 » v1.1.alpha08: major speedup for certain alignment types
• 13 Jun 2011 » New mailing list: pplacer-users
• 23 May 2011 » v1.1.alpha07: SQL overhaul, multiplicity and fixes
• 21 Apr 2011 » v1.1.alpha05: multiprocessor support and general improvement
• 26 Mar 2011 » v1.1.alpha04: bugfix and new subcommands
• 04 Mar 2011 » v1.1.alpha01: presenting guppy
• 03 Feb 2011 » merging in mokaphy and making the tax branch master
• 25 Dec 2010 » v1.0.r031: JTT and big speedups on protein alignments