v1.1.alpha11: Bugfix and minor improvements18 Dec 2011, by Erick
This is mostly a bugfix release. The most significant fixed problem was that placing on a FastTree tree could fail when when using a combined reference + query alignment.
- EDPL coloring for fat trees is back
guppy pcacan now be done in an unweighted fashion
- All commands that work on reference packages now use the -c flag for consistency
- Terminology change: ‘weighted’ -> ‘spread’ and ‘unweighted’ -> ‘point’
- Having some unclassified sequences now works fine in reference packages
There are a bunch of other minor fixes and changes; see the CHANGELOG for more details.