v1.1.alpha11: Bugfix and minor improvements18 Dec 2011, by Erick
This is mostly a bugfix release. The most significant fixed problem was that placing on a FastTree tree could fail when when using a combined reference + query alignment.
* EDPL coloring for fat trees is back
guppy pca can now be done in an unweighted fashion
* All commands that work on reference packages now use the -c flag for
* Terminology change: ‘weighted’ -> ‘spread’ and ‘unweighted’ -> ‘point’
* Having some unclassified sequences now works fine in reference packages
There are a bunch of other minor fixes and changes; see the CHANGELOG for more details.