Group news (RSS)
- 16 Jul 2021 » Postdoc position available: Bayesian phylogenetics in the densely sampled regime
- 29 Mar 2021 » Postdoc position available: variational Bayes phylogenetic inference
- 19 Oct 2020 » Life changes
- 23 Jan 2020 » A Bayesian phylogenetic hidden Markov model for B cell receptor sequences
- 24 Aug 2019 » Variational Bayesian phylogenetic inference
- 18 Jun 2019 » Bayesian phylogenetic inference without sampling trees
- 05 Dec 2018 » Generalizing tree probability estimation via Bayesian networks
- 15 May 2018 » Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity
- 12 May 2018 » The Bayesian optimist's guide to adaptive immune receptor repertoire analysis
- 02 May 2018 » Benchmarking tree and ancestral sequence inference for B cell receptor sequences
- 19 Apr 2018 » Predicting B cell receptor substitution profiles using public repertoire data
- 10 Jan 2018 » Postdoc opening to learn about antibody development during HIV superinfection
- 01 Dec 2017 » Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data
- 14 Nov 2017 » Survival analysis of DNA mutation motifs with penalized proportional hazards
- 05 Sep 2017 » Using genotype abundance to improve phylogenetic inference
- 26 Jun 2017 » Probabilistic Path Hamiltonian Monte Carlo
- 07 Jun 2017 » Smart proposals win for online phylogenetics using sequential Monte Carlo.
- 26 Oct 2016 » Incorporating new sequences into posterior distributions using SMC
- 22 Jul 2016 » Summer high school and undergraduate students 2016
- 11 Jul 2016 » Analysis of a slightly gentler discretization of time-trees
- 30 Jun 2016 » A time-optimal algorithm to build the SPR subgraph on a set of trees
- 05 Jun 2016 » Consistency and convergence rate of phylogenetic inference via regularization
- 16 Apr 2016 » Likelihood-based clustering of B cell clonal families
- 23 Feb 2016 » http://B-T.CR, a discussion site for immune repertoire analysis
- 25 Nov 2015 » New results on the subtree prune regraft distance for unrooted trees
- 01 Sep 2015 » Postdoctoral position to study molecular evolution and phylogenetics of immune cells
- 27 Aug 2015 » High school students 2015
- 22 Jul 2015 » Tanglegrams!
- 15 Jul 2015 » New paper on the shape of the phylogenetic likelihood function
- 02 Apr 2015 » First paper on the curvature of tree space
- 23 Mar 2015 » New paper on annotation of BCR sequences
- 21 Mar 2015 » Welcome Vu Dinh!
- 15 Jan 2015 » PrEP and drug resistance mutations
- 01 Sep 2014 » Funding to support work on B cells
- 22 Aug 2014 » Welcome Chris Warth!
- 28 Jun 2014 » Farewell Connor McCoy and Chris Small
- 31 May 2014 » New office!
- 13 May 2014 » How well do MCMC methods work on the discrete space of phylogenetic trees?
- 23 Mar 2014 » New paper on molecular evolution of B cells
- 15 Mar 2014 » Welcome Duncan Ralph!
- 27 Feb 2014 » APOBEC3G restriction of Simian Foamy Virus in humans
- 14 Feb 2014 » phylobabble: a modern discussion forum for phylogenetics
- 05 Oct 2013 » Multiple infection and recombinant strains of Simian Foamy Virus in humans
- 04 Oct 2013 » Chris Whidden joins!
- 30 Aug 2013 » Does already having HIV decrease your chance of getting infected again?
- 20 Aug 2013 » Добро пожаловать, Владимир Минин (Welcome Vladimir Minin!)
- 18 Aug 2013 » How did SIVcpz vif come to be?
- 25 May 2013 » Demographics and diversity of Simian Foamy Virus
- 17 May 2013 » New paper on abundance-weighted measures of alpha diversity
- 27 Mar 2013 » Welcome Brian Claywell!
- 11 Dec 2012 » nestly paper published
- 03 Sep 2012 » The mean and variance of phylogenetic diversity under rarefaction
- 31 Aug 2012 » You can feel safe from bioterrorism now
- 30 Aug 2012 » Lucie Etienne joins!
- 30 Jun 2012 » New paper on 16s survey of bacterial vaginosis
- 22 Jun 2012 » New paper on phylogenomics of Heterochromatin Protein 1
- 31 May 2012 » How to choose database sequences for comparative analysis?
- 21 May 2012 » Paper out on algebraic approach to tree shape
- 22 Feb 2012 » New paper on phylogenetic placement file format
- 28 Jan 2012 » New paper on primate vs. lentivirus arms race
- 11 Jan 2012 » Chris Small joins the team
- 27 Sep 2011 » New paper on reconciling taxonomy and phylogeny
- 27 Jul 2011 » Edge principal components / squash clustering paper up on arXiv
- 04 May 2011 » (Hopefully) final version of Kantorovich-Rubinstein paper on arXiv
- 24 Apr 2011 » fhcrc/ampliconnoise: our frontend for Chris Quince' denoising code
- 16 Mar 2011 » nestly: software for combinatorial parameter choices
- 14 Mar 2011 » Connor McCoy joins the team
- 18 Jan 2011 » Aaron Gallagher joins the team
pplacer news (RSS)
- 23 Sep 2015 » v1.1.alpha17: better error messages
- 05 May 2014 » v1.1.alpha16: fix NBC and hybrid classification tallies in `classif_table.py`
- 07 Feb 2014 » v1.1.alpha15: gaps, rates, and better support for more sequences
- 20 May 2013 » v1.1.alpha14: BIOM format support, improvements, and fixes
- 21 May 2012 » v1.1.alpha13: New guppy commands and fixes
- 14 Mar 2012 » v1.1.alpha12: new code and general improvements
- 18 Dec 2011 » v1.1.alpha11: Bugfix and minor improvements
- 28 Oct 2011 » v1.1.alpha10: FastTree CAT model support and big-tree heuristics
- 18 Oct 2011 » v1.1.alpha09: many new features and fixes
- 18 Jun 2011 » v1.1.alpha08: major speedup for certain alignment types
- 13 Jun 2011 » New mailing list: pplacer-users
- 23 May 2011 » v1.1.alpha07: SQL overhaul, multiplicity and fixes
- 21 Apr 2011 » v1.1.alpha05: multiprocessor support and general improvement
- 26 Mar 2011 » v1.1.alpha04: bugfix and new subcommands
- 04 Mar 2011 » v1.1.alpha01: presenting guppy
- 03 Feb 2011 » merging in mokaphy and making the tax branch master
- 25 Dec 2010 » v1.0.r031: JTT and big speedups on protein alignments