v1.1.alpha14: BIOM format support, improvements, and fixes20 May 2013, by Connor
There are a number of new features, including
- For mothur/QIIME users,
rpprcan now use a BIOM file and tree in place of a reference package and
- Edge PCA can now perform support overlap minimization (SOM), which minimizes overlap between the first two or three principal components.
Note that the
guppy pcasubcommand has been renamed to
guppy epca, and the output file extensions have changed.
- The mean and variance of PD can be calculated using
- The alpha diversity measures calculated by
guppy fpdnow includes the BWPD metric we recently described, as well as support for the
qD(T)measure of Chao et. al. (2010).
Plus lots of bugfixes and improvements: see the CHANGELOG for details.
Although we very much wanted a final version of classification code in this release, validation is still ongoing.